This healthy apple muffins recipe is naturally gluten-free (made with oats), lightly sweetened with maple syrup, and filled with lots of fresh apple and applesauce…to make these muffins deliciously apple-y.

Healthy Apple Muffins Recipe | Gluten-Free and Dairy-Free

After making batch after batch of my healthy pumpkin muffins this fall (we’re obsessed!), I decided it was time to mix things up and create a version with my other favorite fall flavor. It’s been a muffin marathon around here while I was testing and re-testing and getting this recipe just right. But today, I’m happy to finally share this one with you.

Meet….the most delicious healthy apple muffins.

These guys are just about everything I could ask for in an apple muffin. They are made with healthy, wholesome ingredients that feel like a great choice at the beginning of each day, including lots of fiber-rich oats (which we blend to make the flour) and almond milk (or your choice of milk). They’re lightly sweetened with maple syrup, plus a hint of turbinado (raw) sugar on top if you would like. They’re naturally gluten-free, dairy-free and vegetarian. And, thanks to using both applesauce and an entire fresh apple in the recipe, I’m happy to report that these muffins are super-duper-apple-y…as any good apple muffin should be.

So while fresh apples are still in season, let’s make a batch together!

Granny Smith Apple | Healthy Apple Muffins Recipe

Healthy Apple Muffins Ingredients:

The ingredient list for this apple muffin recipe is pretty simple. You will need:

  • Old fashioned oats: Which we will blitz in the blender or food processor to make oat flour. (Or you can just purchase oat flour at the store. We have a tiny kitchen so I usually only have room for old-fashioned oats on hand in my pantry!)  Note that this recipe calls for old fashioned (rolled) oats, not quick oats.
  • Pumpkin pie spice: Or apple pie spice, or whatever combination of warming spices you love. Here’s my recipe for homemade pumpkin pie spice, if you would like to mix it up yourself.
  • Eggs, baking soda, sea salt, coconut oil, vanilla: All of the typical muffin-y things.
  • Apple: I used a Granny Smith apple, whose tartness and texture I like in these muffins. But any kind of apple will do.
  • Applesauce: I just used plain, unsweetened applesauce (made with 100% apples). But any variety/flavor will do.
  • Almond milk: Or your preferred kind of milk.
  • Maple syrup: Plus a sprinkle of turbinado (raw) sugar on top to sweeten, if you’d like.

How To Make Healthy Apple Muffins

How To Make Apple Muffins:

To make this healthy apple muffins recipe, simply:

  1. Make the oat flour. Puree the oats in a blender or food processor until they reach a fine flour-like consistency.
  2. Mix the dry ingredients. Add in the pumpkin pie spice, baking soda and sea salt, and pulse until combined.
  3. Add the apple. Finely-dice your apple (I recommend about 1/4-inch cubes). Then add it into the oat mixture, with the power on your device turned off, and use a spoon to toss it briefly until the apple chunks are all evenly coated with the oat mixture. This will help them not to all sink to the bottom of your muffins. ;)
  4. Mix the wet ingredients. In a separate mixing bowl, whisk together the eggs, milk, applesauce, maple syrup, coconut oil and vanilla extract until evenly combined
  5. Combine the wet and dry ingredients. Fold the oat and apple mixture into the egg mixture, and stir until just combined. You don’t want to overmix this batter.
  6. Portion into baking cups and bake. Then divide the batter evenly between 12 baking cups (they will be pretty full), sprinkle a pinch of turbinado sugar on top of each cup, and bake until a toothpick inserted in the center comes out clean!
  7. And…enjoy! I’m convinced these muffins are best when they’re nice and hot and fresh outta the oven. But good news, they also store and freeze well! More below.

The BEST Healthy Apple Muffins Recipe

How To Store Apple Muffins:

If you have leftover muffins, feel free to either:

  • Store at room temperature: In a sealed container for up to 3 days.
  • Freeze: In a sealed container (or freezer bag) for up to 3 months. Then let them thaw until they reach room temperature and enjoy.

Healthy Apple Muffins Recipe | Gimme Some Oven

Variations:

To mix things up, feel free to add:

  • Nuts or seeds: Such as pepitas, pecans, sunflower seeds, walnuts, etc. You can either sprinkle them on top of the muffins, or fold them into the batter.
  • Different spices: As mentioned above, any other blend of warming spices would be delicious, such as apple pie spice or chai spice. Some candied ginger would also be delicious in this recipe.
  • Grated apple: If you don’t like the little chunks of apple in your muffins, feel free to grate your apple instead.
  • A maple glaze: Whisk together powdered sugar and maple syrup until they form a glaze-like consistency, and drizzle over your muffins for extra sweetness.

Healthy Apple Muffins

Enjoy, everyone!

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Healthy Apple Muffins Recipe

Healthy Apple Muffins

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.7 from 23 reviews
  • Prep Time: 15 minutes
  • Cook Time: 15 minutes
  • Total Time: 30 minutes
  • Yield: 12 servings

Description

This healthy apple muffins recipe is naturally gluten-free (made with oats), naturally sweetened with maple syrup, and filled with double the apples!


Ingredients

Scale
  • 3 cups old-fashioned oats*
  • 1 tablespoon pumpkin pie spice, homemade or store-bought
  • 1 1/2 teaspoons baking soda
  • 3/4 teaspoon fine sea salt
  • 1 medium apple, finely diced
  • 2 eggs
  • 2/3 cup unsweetened almond milk, plain or vanilla
  • 3/4 cup unsweetened applesauce
  • 1/2 cup maple syrup
  • 3 tablespoons melted coconut oil (or any mild-flavored oil)
  • 1 teaspoon vanilla extract
  • optional: turbinado sugar for sprinkling


Instructions

  1. Preheat oven to 375°F.  Line a 12-cup muffin pan with parchment or cupcake liners, or lightly grease with cooking spray.  Set aside.
  2. Puree oats in a blender or food processor until they reach a fine flour-like consistency.  Add in the pumpkin pie spice, baking soda and sea salt, and pulse until the mixture is evenly combined.  With the power turned off, add in the diced apple.  Then use a spoon to toss until the apple is completely coated in the flour mixture.  Set aside.
  3. In a separate large mixing bowl, whisk together the eggs, milk, applesauce, maple syrup, coconut oil and vanilla extract until evenly combined.  Fold the dry ingredients in with the wet ingredient mixture, and stir until the mixture is just combined.  (Try to avoid over-mixing.)
  4. Portion the batter evenly into the prepared baking cups.  Then sprinkle a generous pinch of turbinado sugar on top of each muffin, if you would like.
  5. Bake for 15-18 minutes, or until a toothpick inserted in the center of the muffins comes out clean.  Remove from the oven and place the pan on a cooling rack for 5 minutes.
  6. Serve warm.  Or let the muffins cool to room temperature, then store in a sealed container for up to 3 days, or freeze for up to 3 months.

Notes

*Or feel free to substitute in 240 grams (8.4 ounces) oat flour.  And as always, be sure to use certified gluten-free ingredients if making this recipe gluten-free.

Recipe adapted from my Healthy Pumpkin Muffins.

Healthy Apple Muffins

About Ali

Hi, I'm Ali Martin! I created this site in 2009 to celebrate good food and gathering around the table. I live in Kansas City with my husband and two young boys and love creating simple, reliable, delicious recipes that anyone can make!

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39 Comments

  1. Phyllis Jane Grant says:

    After mixing the ingredients together, I was fearful. The mixture appeared to be too wet and soupy. Well, they turned out fabulous and I am hard pressed to eat only 2 at a time! I used regular milk & olive oil because that is all I had on hand but followed the rest of the recipe as written. These muffins are really good and I will be making them again!

  2. Susan says:

    These muffins sound very good, but I have to take exception to your saying that almond milk is “protein packed”. It has only 1 gram of protein per serving, which is minimal. Cow’s milk has 8 grams, and the soy milk I use has 9 grams. Those two would meet my definition of “protein packed”.

  3. Kelly says:

    These were delish! I was searching for a healthy muffin recipe with apples and never use white flour or sugar so this was perfect. The only changes I made were that I used cinnamon in place of pumpkin pie spice and I added 1tsp.of baking powder. I also have a recipe for zucchini cake that’s the best I’ve ever eaten and my friend made it once adding 1 Tbsp.of dark cocoa and we both agreed it was even better with that extra hint of flavor. So I added 1Tbsp.to these muffins also. I also always bake my muffins at 425 for 5 min.and then turned it down to 375 . I think the initial blast of heat helps them rise a little better when using a heavier flour than white. My husband also loved them. The next time I make them I’m going to try them with apples and cranberries.

  4. Marlene Matranga says:

    I made my own oatmeal flour, which took just a minute or so. Follow step by step and used a casserole dish rather than muffin pans. My husband raved and loved two slices!
    Hope to find more fun cooking!
    Thank you,
    Marlene Matranga

  5. Kendahl says:

    These are so, so good! Love the texture and flavor

  6. April says:

    I made these today with a couple changes. I used honey instead of syrup and added walnuts. Also used butter instead of oil. They were delicious and actually made 15 muffins instead of a dozen. Thanks so much!